WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00024102 Gene Name  Cbr-magu-2
Sequence Name  ? CBG00761 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: PDZ superfamily; MAGUK p55 subfamily member 5-like; PDZ domain; P-loop containing nucleoside triphosphate hydrolase; Guanylate kinase; SH3-like domain superfamily; SH3 domain; Guanylate kinase/L-type calcium channel beta subunit; and Variant SH3 domain. Is an ortholog of C. elegans magu-2. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG00761b.1 CBG00761b.1   [unknown]
Transcript:CBG00761b.4 CBG00761b.4   [unknown]
Transcript:CBG00761b.2 CBG00761b.2   [unknown]
Transcript:CBG00761b.3 CBG00761b.3   [unknown]
Transcript:CBG00761a.1 CBG00761a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG00761a CBG00761a   [unknown]
CDS:CBG00761b CBG00761b   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00064108
WBVar00023244
WBVar00064093
WBVar00064098
WBVar00064103
WBVar00064088

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tag-117, CTCCTGATATTCAACCTTATATTATTTTCATCGCTGCGCCATCTCTTCATATTCTAAGAA, WBGene00024102   Expr1059190 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG00760, GATGGTTACTGATGCTTACTTGGTGTCCGTGGACAAGGACCATATAAAGGAAGTGACAAA, WBGene00024101   Expr1065759 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region