WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038525 Gene Name  CBG19278
Sequence Name  ? CBG19278 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: WD40/YVTN repeat-like-containing domain superfamily; WD domain, G-beta repeat; WD40-repeat-containing domain superfamily; and WD40 repeat. Is an ortholog of C. elegans wdr-62. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19278b.1 CBG19278b.1   [unknown]
Transcript:CBG19278a.1 CBG19278a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19278a CBG19278a   [unknown]
CDS:CBG19278b CBG19278b   [unknown]

0 RNAi Result

18 Allele

Public Name
WBVar00057159
WBVar00057164
WBVar00057149
WBVar00057154
WBVar00057179
WBVar00057169
WBVar00057174
WBVar00057139
WBVar00057144
WBVar00057124
WBVar00057129
WBVar00057134
WBVar00127354
WBVar00127353
WBVar00127352
WBVar00127357
WBVar00127356
WBVar00127355

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG19278, CAAGACTGTATGGAGCAGCTGCGTATTCACGTTGACAAGAGTCTTCAGGCGAAGAAATTG, WBGene00038525   Expr1069059 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region