WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034550 Gene Name  Cbr-eps-8
Sequence Name  ? CBG13858 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: PH-like domain superfamily; Epidermal growth factor receptor kinase substrate 8-like; Phosphotyrosine-binding domain; PTB/PI domain; SH3-like domain superfamily; SH3 domain; SAM domain; SAM domain (Sterile alpha motif); Sterile alpha motif/pointed domain superfamily; and Tensin/EPS8 phosphotyrosine-binding domain. Is an ortholog of C. elegans eps-8. In C. elegans, eps-8 is involved in several processes, including anatomical structure morphogenesis; barbed-end actin filament capping; and supramolecular fiber organization. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13858a.1 CBG13858a.1   [unknown]
Transcript:CBG13858b.1 CBG13858b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13858a CBG13858a   [unknown]
CDS:CBG13858b CBG13858b   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00057904
WBVar00057909
WBVar00057894
WBVar00057899
WBVar00016007
WBVar00026414
WBVar00026399
WBVar00026419
WBVar00026404
WBVar00026424
WBVar00026409

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-eps-8, GTGCAAGAACATGCATCAGAGAGTTGGATATGTTCCACATACGATTTTGTCAATGGTGCC, WBGene00034550   Expr1067506 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region