WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033778 Gene Name  Cbr-swsn-1
Sequence Name  ? CBG12912 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: SWI/SNF complex subunit SMARCC2; Homeobox-like domain superfamily; Myb-like DNA-binding domain; SMARCC, C-terminal; SWIRM domain; SMARCC, SWIRM-associated domain; Winged helix-like DNA-binding domain superfamily; SANT/Myb domain; SWIRM-associated domain at the C-terminal; and SWIRM-associated region 1. Is an ortholog of C. elegans swsn-1. In C. elegans, swsn-1 is involved in several processes, including determination of adult lifespan; negative regulation of vulval development; and positive regulation of growth rate. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12912.1 CBG12912.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12912 CBG12912   [unknown]

0 RNAi Result

16 Allele

Public Name
WBVar00119109
WBVar00119110
WBVar00119111
WBVar00119112
WBVar00119100
WBVar00119107
WBVar00119108
WBVar00119105
WBVar00119106
WBVar00119103
WBVar00119104
WBVar00119101
WBVar00119102
WBVar00119099
WBVar00119097
WBVar00119098

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-psa-1, GCGTTCCATATGGATCAATTGAAGTATTTGGAGAATCGTGCCAAGCACGAGGCGCATACA, WBGene00033778   Expr1054865 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region