WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00033829 Gene Name  Cbr-cpna-5
Sequence Name  ? CBG12979 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Copine, C-terminal; von Willebrand factor A-like domain superfamily; and Copine. Is an ortholog of C. elegans cpna-5. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG12979a.1 CBG12979a.1   [unknown]
Transcript:CBG12979b.1 CBG12979b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG12979a CBG12979a   [unknown]
CDS:CBG12979b CBG12979b   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00119264
WBVar00119265
WBVar00119262
WBVar00119263
WBVar00119261
WBVar00057939
WBVar00026554
WBVar00026559
WBVar00026564
WBVar00026569
WBVar00026574
WBVar00026579
WBVar00026549
WBVar00026584

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cpna-5, GGCAGCTTGACAGTCCGAGTTCCTGAAAGATGTCATTCCGTTCTTCAAACAAGCAGAGAA, WBGene00033829   Expr1064315 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG12978, TAAATCGTCGTCGATCGACCAAGGCTCTCCATGATTTCTTCAGCCGCCCGTTCACTCAAA, WBGene00033828   Expr1057685 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region