WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034157 Gene Name  Cbr-lov-1
Sequence Name  ? CBG13381 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: GPS motif; Polycystin cation channel; Polycystin cation channel, PKD1/PKD2; PLAT/LH2 domain superfamily; and PLAT/LH2 domain. Is an ortholog of C. elegans lov-1. In C. elegans, lov-1 is involved in response to hermaphrodite contact and vulval location. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13381b.1 CBG13381b.1   [unknown]
Transcript:CBG13381a.1 CBG13381a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13381b CBG13381b   [unknown]
CDS:CBG13381a CBG13381a   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00119671
WBVar00119672
WBVar00119670
WBVar00119675
WBVar00119673
WBVar00119674
WBVar00119668
WBVar00119669
WBVar00119666
WBVar00119667
WBVar00119664
WBVar00119665
WBVar00119663

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-lov-1, TTACCTGAACGATAAGGTATCCAGAAGTATGGGGATAGGAACGGTACGACAAGTGAGAAC, WBGene00034157   Expr1055273 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region