WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00034196 Gene Name  Cbr-che-10
Sequence Name  ? CBG13429 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domain: Ciliary rootlet component, centrosome cohesion. Is an ortholog of C. elegans che-10. In C. elegans, che-10 is involved in cilium assembly. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG13429.1 CBG13429.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG13429 CBG13429   [unknown]

0 RNAi Result

19 Allele

Public Name
WBVar00119749
WBVar00119747
WBVar00119748
WBVar00119756
WBVar00119754
WBVar00119755
WBVar00119752
WBVar00119753
WBVar00119750
WBVar00119751
WBVar00119745
WBVar00119746
WBVar00119743
WBVar00119744
WBVar00119741
WBVar00119742
WBVar00119740
WBVar00015162
WBVar00015157

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_downregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-dyf-14, AAGACGCCAACTATTCCCATAAGCGGAAACTTCTAGAATCCCAAATCCAACTGCTCCGCG, WBGene00034196   Expr1051768 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region