WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032715 Gene Name  Cbr-rin-1
Sequence Name  ? CBG11618 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Vacuolar sorting protein 9 (VPS9) domain; VPS9 domain superfamily; SH2 domain superfamily; VPS9 domain; and SH2 domain. Is an ortholog of C. elegans rin-1. In C. elegans, rin-1 is involved in dorsal/ventral axon guidance and neuron migration. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11618a.1 CBG11618a.1   [unknown]
Transcript:CBG11618b.1 CBG11618b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11618b CBG11618b   [unknown]
CDS:CBG11618a CBG11618a   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00117207
WBVar00117206
WBVar00117203
WBVar00117202
WBVar00117205
WBVar00117204
WBVar00051544
WBVar00020224
WBVar00020229
WBVar00020234

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tag-333, CTCATATGTTCGCCTACAAGCGACACGAAGCTAAAATTGCATGGCCCAGAGCGGCTATTT, WBGene00032715   Expr1051177 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region