WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032780 Gene Name  Cbr-sms-3
Sequence Name  ? CBG11695 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Sphingomyelin synthase-like domain and PAP2 superfamily C-terminal. Is an ortholog of C. elegans sms-3. Biotype  SO:0001217
Genetic Position  :±
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SummaryGenomicsOther
 
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11695b.1 CBG11695b.1   [unknown]
Transcript:CBG11695a.1 CBG11695a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11695a CBG11695a   [unknown]
CDS:CBG11695b CBG11695b   [unknown]

0 RNAi Result

26 Allele

Public Name
WBVar00117393
WBVar00117392
WBVar00117395
WBVar00117394
WBVar00117391
WBVar00117390
WBVar00117382
WBVar00117381
WBVar00117384
WBVar00117383
WBVar00117380
WBVar00117386
WBVar00117385
WBVar00117388
WBVar00117387
WBVar00117371
WBVar00117370
WBVar00117373
WBVar00117372
WBVar00117379
WBVar00117378
WBVar00117375
WBVar00117374
WBVar00117377
WBVar00117376
WBVar00117369

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_downregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-sms-3, AATCTACCATGCCTACTGTGAACTGGACATGTGTATGGAACGACACAAAAGCATACTGTA, WBGene00032780   Expr1055830 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG25821, CTCATCTGGCTCAACGTCTGGATCGAATTCTGACGAGGACACTCTAGAAAAAGGTCAAAA, WBGene00087235   Expr1055742 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region