WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032895 Gene Name  Cbr-lin-10
Sequence Name  ? CBG11848 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: PH-like domain superfamily; PDZ superfamily; PTB/PI domain; PDZ domain; and Phosphotyrosine interaction domain (PTB/PID). Is an ortholog of C. elegans lin-10. In C. elegans, lin-10 is involved in several processes, including neuron-neuron synaptic transmission; positive regulation of backward locomotion; and protein localization. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11848a.1 CBG11848a.1   [unknown]
Transcript:CBG11848b.1 CBG11848b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11848b CBG11848b   [unknown]
CDS:CBG11848a CBG11848a   [unknown]

0 RNAi Result

20 Allele

Public Name
WBVar00117903
WBVar00117900
WBVar00117902
WBVar00117901
WBVar00117899
WBVar00117889
WBVar00117888
WBVar00117890
WBVar00117896
WBVar00117895
WBVar00117898
WBVar00117897
WBVar00117892
WBVar00117891
WBVar00117894
WBVar00117893
WBVar00117885
WBVar00117884
WBVar00117887
WBVar00117886

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-lin-10, GTATCGCTGAACGCGGAGGAATTCGCGTCGGACACCGAATCATCGAAATCAACGGCACGT, WBGene00032895   Expr1050543 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region