WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032397 Gene Name  CBG11242
Sequence Name  ? CBG11242 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domain: von Willebrand factor A-like domain superfamily. Is an ortholog of C. elegans T19D12.1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11242c.1 CBG11242c.1   [unknown]
Transcript:CBG11242d.1 CBG11242d.1   [unknown]
Transcript:CBG11242a.1 CBG11242a.1   [unknown]
Transcript:CBG11242b.1 CBG11242b.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11242c CBG11242c   [unknown]
CDS:CBG11242b CBG11242b   [unknown]
CDS:CBG11242a CBG11242a   [unknown]
CDS:CBG11242d CBG11242d   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00116700
WBVar00116701
WBVar00116702
WBVar00116703
WBVar00116696
WBVar00116697
WBVar00116698
WBVar00116699

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG11242, TAAATATTCTCTTCAAATCGGAGCCGGAAACGATGATGCTGTTGCTGCTACAATCGCTAG, WBGene00032397   Expr1068573 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region