WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031093 Gene Name  Cbr-wdr-20
Sequence Name  ? CBG09527 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: WD40/YVTN repeat-like-containing domain superfamily; WD40-repeat-containing domain superfamily; and WD40 repeat. Is an ortholog of C. elegans wdr-20. In C. elegans, wdr-20 is involved in positive regulation of locomotion involved in locomotory behavior; positive regulation of macromolecule metabolic process; and positive regulation of protein localization to cell surface. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09527.2 CBG09527.2   [unknown]
Transcript:CBG09527.1 CBG09527.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09527 CBG09527   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00114977
WBVar00114978
WBVar00114979
WBVar00114973
WBVar00114974
WBVar00114975
WBVar00114976
WBVar00114966
WBVar00114967
WBVar00114968
WBVar00114969
WBVar00114970
WBVar00114971
WBVar00114972
WBVar00014714

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG09527, GAAGTGTGGGACACGATACATTCCTATGTTTGTGGGACATCACAAACGAAATTCTCAACA, WBGene00031093   Expr1055381 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region