WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031256 Gene Name  Cbr-nrx-1
Sequence Name  ? CBG09719 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: EGF-like domain; Laminin G domain; and Concanavalin A-like lectin/glucanase domain superfamily. Is an ortholog of C. elegans nrx-1. In C. elegans, nrx-1 is involved in negative regulation of receptor clustering. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09719c.1 CBG09719c.1   [unknown]
Transcript:CBG09719a.1 CBG09719a.1   [unknown]
Transcript:CBG09719b.1 CBG09719b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09719a CBG09719a   [unknown]
CDS:CBG09719b CBG09719b   [unknown]
CDS:CBG09719c CBG09719c   [unknown]

0 RNAi Result

19 Allele

Public Name
WBVar00115109
WBVar00115105
WBVar00115106
WBVar00115107
WBVar00115108
WBVar00115110
WBVar00115101
WBVar00115102
WBVar00115103
WBVar00115104
WBVar00115100
WBVar00115093
WBVar00115094
WBVar00115095
WBVar00115096
WBVar00115092
WBVar00115097
WBVar00115098
WBVar00115099

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-nrx-1, GAATCACGGGCGGTGCATTCAATTATGGAGTTCCATTCGCTGTGATTGTAGCCTAACAGC, WBGene00031256   Expr1054411 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region