WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030266 Gene Name  Cbr-grh-1
Sequence Name  ? CBG08484 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domain: CP2 transcription factor. Is an ortholog of C. elegans grh-1. In C. elegans, grh-1 is involved in defense response to bacterium; determination of adult lifespan; and ecdysis, collagen and cuticulin-based cuticle. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG08484a.1 CBG08484a.1   [unknown]
Transcript:CBG08484b.1 CBG08484b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG08484b CBG08484b   [unknown]
CDS:CBG08484a CBG08484a   [unknown]

0 RNAi Result

16 Allele

Public Name
WBVar00113627
WBVar00113626
WBVar00113628
WBVar00053014
WBVar00053019
WBVar00053024
WBVar00021274
WBVar00021309
WBVar00021279
WBVar00021314
WBVar00021284
WBVar00021319
WBVar00021289
WBVar00021294
WBVar00021299
WBVar00021304

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-grh-1, AGCGTTGCGCGAAAGGGATAACCGTAAAAGTGGATGACGAAATGCTCCGTTTGTATTGCA, WBGene00030266   Expr1070136 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region