WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029813 Gene Name  Cbr-smu-1
Sequence Name  ? CBG07923 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: WD domain, G-beta repeat; CTLH, C-terminal LisH motif; G-protein beta WD-40 repeat; WD40 repeat; WD40/YVTN repeat-like-containing domain superfamily; LisH-like dimerisation domain; LIS1 homology motif; and WD40-repeat-containing domain superfamily. Is an ortholog of C. elegans smu-1. In C. elegans, smu-1 is involved in several processes, including mechanosensory behavior; nematode larval development; and regulation of alternative mRNA splicing, via spliceosome. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG07923.1 CBG07923.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG07923 CBG07923   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00009442
WBVar00009447
WBVar00009432
WBVar00009437
WBVar00009482
WBVar00009487
WBVar00009472
WBVar00009477
WBVar00009462
WBVar00009467
WBVar00009452
WBVar00009457
WBVar00009492
WBVar00009497

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-smu-1, CATTCCAAAAAGCGACCCACCCCAAATGGTGGTCTGTAATCGCTCGAATACGCTTTATGT, WBGene00029813   Expr1064737 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region