WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028964 Gene Name  CBG06728
Sequence Name  ? CBG06728 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Interferon regulatory factor 2-binding protein 1 & 2, zinc finger and Interferon regulatory factor 2-binding protein zinc finger. Is an ortholog of C. elegans ifbp-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06728b.1 CBG06728b.1   [unknown]
Transcript:CBG06728a.1 CBG06728a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06728b CBG06728b   [unknown]
CDS:CBG06728a CBG06728a   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00111650
WBVar00111653
WBVar00111654
WBVar00111651
WBVar00111652
WBVar00111657
WBVar00111658
WBVar00111655
WBVar00111656
WBVar00021084
WBVar00021089
WBVar00021094
WBVar00021099
WBVar00021104
WBVar00021079

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 3 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day3_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-tag-260, TTTCATGCAGGGAGAGATTGCTCAGATTCTTGGAGACGAGTATGAAGACTTCAAGAAGAC, WBGene00028964   Expr1057410 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region