WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027431 Gene Name  CBG04827
Sequence Name  ? CBG04827 Organism  Caenorhabditis briggsae
Automated Description  Is affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Late embryogenesis abundant protein and Late embryogenesis abundant protein, LEA_4 subgroup. Is an ortholog of C. elegans lea-1. In C. elegans, lea-1 is involved in hyperosmotic response; response to desiccation; and response to heat. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04827.1 CBG04827.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04827 CBG04827   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00008669
WBVar00008659
WBVar00008664
WBVar00008649
WBVar00008654
WBVar00008639
WBVar00008644
WBVar00008629
WBVar00008634
WBVar00008614
WBVar00008619
WBVar00008624

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_upregulated
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG04827, ACGGACCTCTCGAAACCGCCAAGGACAAGATCGAAAGTGCTTGGGAAGCAACCAAGGAAA, WBGene00027431   Expr1070066 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region