WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00031608 Gene Name  Cbr-clip-1
Sequence Name  ? CBG10142 Organism  Caenorhabditis briggsae
Automated Description  Is an ortholog of C. elegans clip-1. In C. elegans, clip-1 is involved in nucleus localization and nucleus organization. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG10142c.1 CBG10142c.1   [unknown]
Transcript:CBG10142b.1 CBG10142b.1   [unknown]
Transcript:CBG10142a.1 CBG10142a.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG10142a CBG10142a   [unknown]
CDS:CBG10142c CBG10142c   [unknown]
CDS:CBG10142b CBG10142b   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00007209
WBVar00007204
WBVar00007199
WBVar00115578
WBVar00115579
WBVar00115580
WBVar00115581
WBVar00115582

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG10142, CCTGAAAACCATGCAGATGACGTCATTTATGCTCCAGATGAGATTATTTCTAGTAGGAGT, WBGene00031608   Expr1061603 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region