WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00028279 Gene Name  Cbr-cla-1
Sequence Name  ? CBG05922 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: C2 domain; PDZ domain; C2 domain superfamily; and PDZ superfamily. Is an ortholog of C. elegans cla-1. In C. elegans, cla-1 is involved in maintenance of presynaptic active zone structure; spontaneous synaptic transmission; and synaptic vesicle cycle. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05922d.1 CBG05922d.1   [unknown]
Transcript:CBG05922e.1 CBG05922e.1   [unknown]
Transcript:CBG05922b.1 CBG05922b.1   [unknown]
Transcript:CBG05922c.1 CBG05922c.1   [unknown]
Transcript:CBG05922a.1 CBG05922a.1   [unknown]
 

Other

5 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05922d CBG05922d   [unknown]
CDS:CBG05922e CBG05922e   [unknown]
CDS:CBG05922b CBG05922b   [unknown]
CDS:CBG05922c CBG05922c   [unknown]
CDS:CBG05922a CBG05922a   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00006042
WBVar00111158
WBVar00111159
WBVar00111156
WBVar00111157
WBVar00111161
WBVar00111162
WBVar00111160
WBVar00111154
WBVar00111155
WBVar00012414
WBVar00012419
WBVar00012404
WBVar00012409

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 3 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day3_downregulated

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG05921, ACAACATGGTTCAATTCACTTGATTACGACGGTGAATACACTTTCGTTTTTACGAGTAAG, WBGene00028278   Expr1054191 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG05923, AAGTGCCTCCATCGATATTATACCCGAAAGGAGGTATCAACGCACGTCATCAGGACAAAC, WBGene00028280   Expr1066435 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
Cbr-tag-199, GCGGCGTCAACATTACCGATCCGTCATCAACTCTGGATAAACTGACGAATTCGTATAAAT, WBGene00028279   Expr1053210 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region