WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00030928 Gene Name  Cbr-aspm-1
Sequence Name  ? CBG09326 Organism  Caenorhabditis briggsae
Automated Description  Is affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: IQ calmodulin-binding motif; CH domain superfamily; Calponin homology domain; IQ motif, EF-hand binding site; and Calponin homology (CH) domain. Is an ortholog of C. elegans aspm-1. In C. elegans, aspm-1 is involved in establishment of meiotic spindle orientation; meiotic spindle organization; and regulation of protein localization. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG09326.1 CBG09326.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG09326 CBG09326   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00004309
WBVar00004314
WBVar00004319
WBVar00114777
WBVar00114776
WBVar00114775

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-aspm-1, TTCTTCTGATGTGCAAACACTGCCAAAACCAGGAGTTCTTTACACCAATCGTTACATCGC, WBGene00030928   Expr1065398 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region