WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038902 Gene Name  Cbr-set-10
Sequence Name  ? CBG19732 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: MYND finger and Zinc finger, MYND-type. Is an ortholog of C. elegans set-10. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19732.1 CBG19732.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19732 CBG19732   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00001089
WBVar00001084
WBVar00001099
WBVar00001094
WBVar00001109
WBVar00001104
WBVar00001119
WBVar00001114
WBVar00001129
WBVar00001124
WBVar00127734
WBVar00127733
WBVar00127732
WBVar00127731
WBVar00127730

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated
  Transcripts that showed significantly increased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-set-10, GTCGTTTGTATATCGCTTGTAAATGTCTCTCACGTCTTCAAAAGTATTCTATGGACATCC, WBGene00038902   Expr1070110 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region