WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038952 Gene Name  Cbr-zoo-1
Sequence Name  ? CBG19788 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: PDZ superfamily; PDZ domain; P-loop containing nucleoside triphosphate hydrolase; Guanylate kinase; Guanylate kinase/L-type calcium channel beta subunit; and ZU5 domain. Is an ortholog of C. elegans zoo-1. In C. elegans, zoo-1 is involved in actin filament organization; embryo development; and embryonic morphogenesis. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19788.1 CBG19788.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19788 CBG19788   [unknown]

0 RNAi Result

30 Allele

Public Name
WBVar00001294
WBVar00001289
WBVar00001299
WBVar00001309
WBVar00001304
WBVar00001314
WBVar00127802
WBVar00127801
WBVar00127800
WBVar00127803
WBVar00127790
WBVar00127794
WBVar00127793
WBVar00127792
WBVar00127791
WBVar00127798
WBVar00127797
WBVar00127796
WBVar00127795
WBVar00127789
WBVar00127788
WBVar00127783
WBVar00127782
WBVar00127781
WBVar00127780
WBVar00127787
WBVar00127786
WBVar00127785
WBVar00127784
WBVar00127799

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-zoo-1, GGAGAGGGCGGAGAGTGGAAGCATATGGAGATTGAACAGCAGGCGACAAACGCCAATCAT, WBGene00038952   Expr1064286 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region