WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039205 Gene Name  Cbr-phlp-2
Sequence Name  ? CBG20149 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Leucine-rich repeat, typical subtype; PPM-type phosphatase domain superfamily; Leucine-rich repeat; Leucine rich repeat; PPM-type phosphatase domain; Protein phosphatase 2C; and Leucine-rich repeat domain superfamily. Is an ortholog of C. elegans phlp-2. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20149.1 CBG20149.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20149 CBG20149   [unknown]

0 RNAi Result

16 Allele

Public Name
WBVar00049294
WBVar00049274
WBVar00049279
WBVar00049284
WBVar00049289
WBVar00128257
WBVar00028572
WBVar00028577
WBVar00028582
WBVar00028552
WBVar00028587
WBVar00028557
WBVar00028592
WBVar00028562
WBVar00028597
WBVar00028567

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG20149, ATTCAATGAAACGCGAGATTTGTTGAGCAAATCGCTGAAGTTGAGCCCACCGAATACGGT, WBGene00039205   Expr1056499 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region