WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039420 Gene Name  Cbr-vab-19
Sequence Name  ? CBG20436 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Ankyrin repeats (3 copies); Ankyrin repeat-containing domain superfamily; Ankyrin repeats (many copies); Ankyrin repeat; and Domain of unknown function DUF3447. Is an ortholog of C. elegans vab-19. In C. elegans, vab-19 is involved in several processes, including actin cytoskeleton organization; cell-cell junction maintenance; and embryo development. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20436.1 CBG20436.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20436 CBG20436   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00044679
WBVar00049204
WBVar00049209
WBVar00049199
WBVar00128685
WBVar00128689
WBVar00128688
WBVar00128687
WBVar00128652
WBVar00128651
WBVar00128650
WBVar00128656
WBVar00128655
WBVar00128654
WBVar00128653

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-vab-19, ATCTCAACATGGACAAACTGCCCTTATGTTGGCCGTCTCACACGGCAAAAAGACCACAAC, WBGene00039420   Expr1050568 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region