WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027225 Gene Name  CBG04582
Sequence Name  ? CBG04582 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Fibronectin type III; Fibronectin type III superfamily; Fibronectin type III domain; and Immunoglobulin-like fold. Is an ortholog of C. elegans C53A5.13. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG04582.1 CBG04582.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG04582 CBG04582   [unknown]

0 RNAi Result

22 Allele

Public Name
WBVar00109556
WBVar00109557
WBVar00109558
WBVar00109559
WBVar00109564
WBVar00109565
WBVar00109566
WBVar00109560
WBVar00109561
WBVar00109562
WBVar00109563
WBVar00051859
WBVar00051854
WBVar00051844
WBVar00051849
WBVar00051864
WBVar00051814
WBVar00051819
WBVar00051834
WBVar00051839
WBVar00051824
WBVar00051829

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Heat shock: 34C 30min. Transcripts that showed significantly increased expression in L2 larva stage C. briggsae animals after incubated in a 34C water bath for 30min. DESeq2 v 1.18.1, fold change > 2, FDR < 0.01. WBPaper00058955:heatshock_upregulated_CBG

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region