WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027983 Gene Name  Cbr-unc-80
Sequence Name  ? CBG05555 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Cation channel complex component UNC80, N-terminal and UNC80 N-terminal. Is an ortholog of C. elegans unc-80. In C. elegans, unc-80 is involved in several processes, including monoatomic cation homeostasis; positive regulation of locomotion; and response to anesthetic. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

8 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05555e.1 CBG05555e.1   [unknown]
Transcript:CBG05555c.1 CBG05555c.1   [unknown]
Transcript:CBG05555d.1 CBG05555d.1   [unknown]
Transcript:CBG05555f.3 CBG05555f.3   [unknown]
Transcript:CBG05555f.2 CBG05555f.2   [unknown]
Transcript:CBG05555f.1 CBG05555f.1   [unknown]
Transcript:CBG05555b.1 CBG05555b.1   [unknown]
Transcript:CBG05555a.1 CBG05555a.1   [unknown]
 

Other

6 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05555a CBG05555a   [unknown]
CDS:CBG05555b CBG05555b   [unknown]
CDS:CBG05555c CBG05555c   [unknown]
CDS:CBG05555d CBG05555d   [unknown]
CDS:CBG05555e CBG05555e   [unknown]
CDS:CBG05555f CBG05555f   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00040354
WBVar00040359
WBVar00040364
WBVar00040369
WBVar00040374
WBVar00040349
WBVar00110674
WBVar00110675
WBVar00110672
WBVar00110673
WBVar00110669
WBVar00110670
WBVar00110671
WBVar00012074
WBVar00012079

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-unc-80, AAAAGTCGCACGAGGTGTCGGAAGACGTCTTCCAGATCACAGAACAACATCAATTGGTGT, WBGene00027983   Expr1057452 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region