WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00027995 Gene Name  Cbr-elp-1
Sequence Name  ? CBG05574 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: WD domain, G-beta repeat; HELP motif; HELP; WD40 repeat; WD40/YVTN repeat-like-containing domain superfamily; and WD40-repeat-containing domain superfamily. Is an ortholog of C. elegans elp-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG05574b.1 CBG05574b.1   [unknown]
Transcript:CBG05574a.1 CBG05574a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG05574a CBG05574a   [unknown]
CDS:CBG05574b CBG05574b   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00040539
WBVar00110726
WBVar00110724
WBVar00110725
WBVar00012179
WBVar00012184

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-elp-1, GTATCAATTGTTCTCCTGTTCGCCAACTGATAATTCTATTTTTGAGTGGAGTTTAGAATG, WBGene00027995   Expr1061394 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region