WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00026471 Gene Name  CBG03659
Sequence Name  ? CBG03659 Organism  Caenorhabditis briggsae
Automated Description  Is affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: GPCR-chaperone; Ankyrin repeats (3 copies); Ankyrin repeat-containing domain superfamily; Ankyrin repeat domain-containing protein 13; Ankyrin repeat; and Domain of unknown function DUF3447. Is an ortholog of C. elegans C01F1.6. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG03659.1 CBG03659.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG03659 CBG03659   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00108679
WBVar00108678
WBVar00108683
WBVar00108682
WBVar00108681
WBVar00108680
WBVar00108689
WBVar00108688
WBVar00108687
WBVar00108686
WBVar00108685
WBVar00108684

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG03659, ATTTTCCAATAACATCCACGATAAACTATTCACAATTCCGACATCGTATCGCGAGGATCC, WBGene00026471   Expr1050964 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region