WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00086570 Gene Name  CBG25156
Sequence Name  ? CBG25156 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: LDL receptor-like superfamily; Low-density lipoprotein receptor domain class A; and Low-density lipoprotein (LDL) receptor class A repeat. Is an ortholog of C. elegans lrpc-1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG25156.1 CBG25156.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG25156 CBG25156   [unknown]

0 RNAi Result

3 Allele

Public Name
WBVar00041072
WBVar00041077
WBVar00040992

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Heat shock: 34C 30min. Transcripts that showed significantly increased expression in L2 larva stage C. briggsae animals after incubated in a 34C water bath for 30min. DESeq2 v 1.18.1, fold change > 2, FDR < 0.01. WBPaper00058955:heatshock_upregulated_CBG

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG25156, GAATATCAGAGATGTGATAATATCACGGATTGTGCCGACGGTTCTGATGAAAAGGATTGC, WBGene00086570   Expr1069202 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region