WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025540 Gene Name  Cbr-ifb-1
Sequence Name  ? CBG02495 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Intermediate filament, ifa/ifb; Intermediate filament protein; Lamin Tail Domain; Lamin tail domain; Lamin tail domain superfamily; and Intermediate filament, rod domain. Is an ortholog of C. elegans ifb-1. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02495a.1 CBG02495a.1   [unknown]
Transcript:CBG02495b.1 CBG02495b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02495b CBG02495b   [unknown]
CDS:CBG02495a CBG02495a   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00107402
WBVar00107401
WBVar00107400
WBVar00107396
WBVar00107395
WBVar00107399
WBVar00107398
WBVar00107397

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated
  C.briggsae proteins that showed significantly increased at L4 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L4_vs_embryo_upregulated
  C.briggsae proteins that showed significantly increased at L1 larva stage than in emrbyo. Benjamin and Hochberg corrected p-value < 0.05. WBPaper00051425:CB_L1_vs_embryo_upregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ifb-1, AACAAGGATGGAGAGGAACGTGCCACCCACACCCAGAAGACCATCCAATCCGGACAATAA, WBGene00025540   Expr1051474 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG02494, GTCTCAAAAGGAGTCCTCGGAGTATGAGATTCAATACAGATCCACGATTCAACCGAGAAC, WBGene00025539   Expr1057917 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region