WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025702 Gene Name  Cbr-die-1
Sequence Name  ? CBG02697 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Zinc finger, C2H2 type; Zinc finger C2H2-type; and Zinc finger C2H2 superfamily. Is an ortholog of C. elegans die-1. In C. elegans, die-1 is involved in several processes, including cell fate specification; maintenance of left/right asymmetry; and neuron development involved in amphid sensory organ development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02697.1 CBG02697.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02697 CBG02697   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00107879
WBVar00107602
WBVar00107601
WBVar00107600
WBVar00107604
WBVar00107603
WBVar00107594
WBVar00107593
WBVar00107592
WBVar00107591
WBVar00107599
WBVar00107598
WBVar00107597
WBVar00107596
WBVar00107595

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-die-1, ATGATAACAAGAACGCTGCTGAGAAGCTGTTCCCAATACAAACCGTTTTGGTCAGGTGCC, WBGene00025702   Expr1068404 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region