WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00025181 Gene Name  CBG02038
Sequence Name  ? CBG02038 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Purine 5'-nucleotidase; HAD superfamily; HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase; 5' nucleotidase family; and HAD-like superfamily. Is an ortholog of C. elegans Y71H10B.1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG02038b.1 CBG02038b.1   [unknown]
Transcript:CBG02038a.1 CBG02038a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG02038a CBG02038a   [unknown]
CDS:CBG02038b CBG02038b   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00106941
WBVar00106942
WBVar00106940
WBVar00106938
WBVar00106939
WBVar00106936
WBVar00106937
WBVar00106935
WBVar00054249
WBVar00022314
WBVar00022319
WBVar00022324

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG02038, GTTACAATCTGGTCCACTACCCATCGTTCTACTATTTCCGCGCTCCAATGAAGTGCATGC, WBGene00025181   Expr1063122 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region