WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039104 Gene Name  Cbr-soc-2
Sequence Name  ? CBG19995 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Leucine-rich repeat domain superfamily; Leucine-rich repeat; Leucine-rich repeat, typical subtype; and Leucine rich repeat. Is an ortholog of C. elegans soc-2. In C. elegans, soc-2 is involved in several processes, including fibroblast growth factor receptor signaling pathway; positive regulation of Ras protein signal transduction; and vulval development. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19995b.1 CBG19995b.1   [unknown]
Transcript:CBG19995a.1 CBG19995a.1   [unknown]
Transcript:CBG19995d.1 CBG19995d.1   [unknown]
Transcript:CBG19995c.1 CBG19995c.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19995d CBG19995d   [unknown]
CDS:CBG19995c CBG19995c   [unknown]
CDS:CBG19995b CBG19995b   [unknown]
CDS:CBG19995a CBG19995a   [unknown]

0 RNAi Result

6 Allele

Public Name
WBVar00037439
WBVar00037434
WBVar00009204
WBVar00009219
WBVar00009209
WBVar00009214

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-soc-2, GGAGACGGTTCCAACGGAAATTGGATTCTTACAGCATTTGACAAAATTGTGGGTTCAGTC, WBGene00039104   Expr1068448 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG19998, GATCCAGTGCATTTGCAGTCAATTGCGTTACGTGGACGGGGAAAAGGAGAGAATGGAAGT, WBGene00039105   Expr1060626 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG26417, GGGAAACTCCTCCAGCCACTAATAATACGGGAGCAACAACGACAAAACGAGTCTCGGTGA, WBGene00087831   Expr1053140 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region