WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00087680 Gene Name  CBG26266
Sequence Name  ? CBG26266 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: FAM65, N-terminal; RIPOR family member 3; and Filopodia upregulated, FAM65. Is an ortholog of C. elegans Y37A1A.4. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG26266.1 CBG26266.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG26266 CBG26266   [unknown]

0 RNAi Result

14 Allele

Public Name
WBVar00037834
WBVar00009839
WBVar00009844
WBVar00009824
WBVar00009829
WBVar00009834
WBVar00009819
WBVar00126926
WBVar00126925
WBVar00126924
WBVar00126929
WBVar00126928
WBVar00126927
WBVar00026002

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG18780, GCTATTCTCCAGTCAGCCGCAGTTGGTGACAATGAATTTGAACTCAATGGGAACGATTAA, WBGene00038133   Expr1062519 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG26266, CCCCATCGGCCCGGCATCCAAAAATATCAGTAGAAAAGTTTCCAGCTACTCGAAAATGTC, WBGene00087680   Expr1053382 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG22464, GGCTATCTACATGTTATCCATTGAATTCGTCGTTAATTGTGCCGAAGGACAAGTTGAAGA, WBGene00041017   Expr1052788 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region