WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029087 Gene Name  Cbr-zfp-1
Sequence Name  ? CBG06894 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: PHD-zinc-finger like domain; PHD-finger; Zinc finger, FYVE/PHD-type; Zinc finger, RING/FYVE/PHD-type; and Zinc finger, PHD-type. Is an ortholog of C. elegans zfp-1. In C. elegans, zfp-1 is involved in regulatory ncRNA-mediated post-transcriptional gene silencing. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06894.1 CBG06894.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06894 CBG06894   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00035049
WBVar00035054
WBVar00035034
WBVar00035039
WBVar00035044
WBVar00111863
WBVar00111866
WBVar00111867
WBVar00111864
WBVar00111865

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-zfp-1, GGCTAGCAGAAGTGAATACGTTGGATTTGGCGAGAAAACGAGAAGCATCGCTTCCTGATC, WBGene00029087   Expr1064464 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region