WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00000329 Gene Name  Cbr-fem-3
Sequence Name  ? CBG21774 Organism  Caenorhabditis briggsae
Automated Description  Is an ortholog of C. elegans fem-3. In C. elegans, fem-3 is involved in several processes, including positive regulation of macromolecule metabolic process; positive regulation of reproductive process; and sex determination. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21774.1 CBG21774.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21774 CBG21774   [unknown]

0 RNAi Result

7 Allele

Public Name
WBVar00130449
WBVar00130448
WBVar00130451
WBVar00130450
WBVar00130453
WBVar00130452
WBVar00130454

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-fem-3, GCCGTTGGAATCCGAGCTGATTATTGTGCTGGATTGGCTGGCGAAATTGATCATTTGTGA, WBGene00000329   Expr1056792 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

2 Strains

WormBase ID
WBStrain00040965
WBStrain00040964

0 Upstream Intergenic Region