WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041755 Gene Name  CBG23391
Sequence Name  ? CBG23391 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Type I phosphodiesterase / nucleotide pyrophosphatase; Ectonucleotide pyrophosphatase/phosphodiesterase, nematoda; Type I phosphodiesterase/nucleotide pyrophosphatase/phosphate transferase; and Alkaline-phosphatase-like, core domain superfamily. Is an ortholog of C. elegans C27A7.3. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG23391.1 CBG23391.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG23391 CBG23391   [unknown]

0 RNAi Result

10 Allele

Public Name
WBVar00027179
WBVar00027184
WBVar00027169
WBVar00132984
WBVar00132985
WBVar00027189
WBVar00132988
WBVar00132989
WBVar00132986
WBVar00132987

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG23391, AGGATAGCGGGGATTCAATTCCAGATTGGAGCACTCAGCCACCAACAAAACGTTTATCTC, WBGene00041755   Expr1058282 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region