WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00041436 Gene Name  Cbr-gly-5
Sequence Name  ? CBG23000 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Ricin B, lectin domain; Nucleotide-diphospho-sugar transferases; Glycosyl transferase family 2; Ricin-type beta-trefoil lectin domain; Ricin B-like lectins; and Glycosyltransferase 2-like. Is an ortholog of C. elegans gly-5. In C. elegans, gly-5 is involved in protein O-linked glycosylation via threonine. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

4 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG23000a.1 CBG23000a.1   [unknown]
Transcript:CBG23000b.1 CBG23000b.1   [unknown]
Transcript:CBG23000c.1 CBG23000c.1   [unknown]
Transcript:CBG23000d.1 CBG23000d.1   [unknown]
 

Other

4 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG23000b CBG23000b   [unknown]
CDS:CBG23000a CBG23000a   [unknown]
CDS:CBG23000d CBG23000d   [unknown]
CDS:CBG23000c CBG23000c   [unknown]

0 RNAi Result

60 Allele

Public Name
WBVar00132608
WBVar00132609
WBVar00132606
WBVar00132607
WBVar00132612
WBVar00132613
WBVar00132610
WBVar00132611
WBVar00132616
WBVar00132617
WBVar00132614
WBVar00132615
WBVar00132620
WBVar00132621
WBVar00132618
WBVar00132619
WBVar00132624
WBVar00132625
WBVar00132622
WBVar00058509
WBVar00132623
WBVar00132628
WBVar00132629
WBVar00132626
WBVar00132627
WBVar00058514
WBVar00132632
WBVar00132633
WBVar00132630
WBVar00132631

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-gly-5, GATGTCTCTGCCAGAAAGAAGCTTCGTTCGGATTTGGGCTGCAAATCGTTCAAATGGTAC, WBGene00041436   Expr1062224 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region