WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00042112 Gene Name  Cbr-sdz-34.3
Sequence Name  ? CBG23865 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Zinc finger, RING-type; Ring finger domain; and Zinc finger, RING/FYVE/PHD-type. Is an ortholog of C. elegans Y73C8C.3 and sdz-34. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG23865a.1 CBG23865a.1   [unknown]
Transcript:CBG23865b.1 CBG23865b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG23865b CBG23865b   [unknown]
CDS:CBG23865a CBG23865a   [unknown]

0 RNAi Result

13 Allele

Public Name
WBVar00036442
WBVar00036412
WBVar00036447
WBVar00036417
WBVar00036452
WBVar00036422
WBVar00036457
WBVar00036427
WBVar00036462
WBVar00036432
WBVar00036467
WBVar00036437
WBVar00036407

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Heat shock: 34C 30min. Transcripts that showed significantly increased expression in L2 larva stage C. briggsae animals after incubated in a 34C water bath for 30min. DESeq2 v 1.18.1, fold change > 2, FDR < 0.01. WBPaper00058955:heatshock_upregulated_CBG

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG17013, GAGTGTGCTCAAGAATGGTTCAAGACAAAGAGAACGTGTCCTGCATGCAGTTCAGCCCTT, WBGene00036790   Expr1057147 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region