WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040632 Gene Name  Cbr-cpna-1
Sequence Name  ? CBG21973 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Copine; Copine domain protein CPNA-1; Copine, C-terminal; von Willebrand factor A-like domain superfamily; and von Willebrand factor, type A. Is an ortholog of C. elegans cpna-1. In C. elegans, cpna-1 is involved in positive regulation of sarcomere organization. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG21973.1 CBG21973.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG21973 CBG21973   [unknown]

0 RNAi Result

28 Allele

Public Name
WBVar00130837
WBVar00130839
WBVar00130838
WBVar00130841
WBVar00130840
WBVar00130843
WBVar00130842
WBVar00130845
WBVar00130844
WBVar00130847
WBVar00130846
WBVar00130849
WBVar00130848
WBVar00130851
WBVar00130850
WBVar00130853
WBVar00130852
WBVar00130855
WBVar00130854
WBVar00130857
WBVar00130856
WBVar00130859
WBVar00130858
WBVar00130861
WBVar00130860
WBVar00130863
WBVar00130862
WBVar00130864

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-cpna-1, AAGTAACAAACGAGCGAGCCACACGACGAGCGATCGTTCAAGCCTGCCAACATCCATTAT, WBGene00040632   Expr1058364 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region