WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040661 Gene Name  Cbr-atm-1
Sequence Name  ? CBG22015 Organism  Caenorhabditis briggsae
Automated Description  Is affected by Cbr-htz-1 based on RNA-seq studies. Is predicted to encode a protein with the following domains: FATC domain; Phosphatidylinositol 3-/4-kinase, catalytic domain superfamily; Protein kinase-like domain superfamily; Phosphatidylinositol 3-/4-kinase, catalytic domain; Phosphatidylinositol 3- and 4-kinase; and Serine/threonine-protein kinase ATM/Tel1. Is an ortholog of C. elegans atm-1. In C. elegans, atm-1 is involved in response to ionizing radiation. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22015.1 CBG22015.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22015 CBG22015   [unknown]

0 RNAi Result

9 Allele

Public Name
WBVar00130943
WBVar00130942
WBVar00045229
WBVar00130944
WBVar00045219
WBVar00130939
WBVar00130941
WBVar00045224
WBVar00130940

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 3 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day3_vs_Day1_upregulated
  Transcripts that showed significantly increased expression in Cbr-htz-1(gu167) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-htz-1(gu167)_upregulated

3 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-atm-1, ATCGAGAATGGACGATTGGCTGAGGATTGCACCAAGATTATGGAGAAGTTGAAGGAGAAT, WBGene00040661   Expr1067087 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG22013, TGGAGAAGATACGGTGGATTTCATGGATTTCGGGCTGGCCGAATTTTATAAGCAGTTAAA, WBGene00040660   Expr1068612 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG22011, CATTTAAAAATGTGTTGTCGCCAGCCAATCGATCATAATACCGTACCATGGATCCCCTAT, WBGene00040658   Expr1066860 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region