WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040806 Gene Name  CBG22191
Sequence Name  ? CBG22191 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Zinc finger, C3HC4 type (RING finger); B30.2/SPRY domain superfamily; SPRY domain; Zinc finger, RING/FYVE/PHD-type; and Concanavalin A-like lectin/glucanase domain superfamily. Is an ortholog of C. elegans F16A11.1. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22191.1 CBG22191.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22191 CBG22191   [unknown]

0 RNAi Result

18 Allele

Public Name
WBVar00131232
WBVar00131233
WBVar00131230
WBVar00131231
WBVar00131236
WBVar00131237
WBVar00131234
WBVar00131235
WBVar00131238
WBVar00131239
WBVar00131224
WBVar00131225
WBVar00131222
WBVar00131223
WBVar00131228
WBVar00131229
WBVar00131226
WBVar00131227

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Heat shock: 34C 30min. Transcripts that showed significantly increased expression in L2 larva stage C. briggsae animals after incubated in a 34C water bath for 30min. DESeq2 v 1.18.1, fold change > 2, FDR < 0.01. WBPaper00058955:heatshock_upregulated_CBG

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG22191, TGCCCTCTGTGTCGTACGCCAATCGTAGAACGTGTCCCAATGAAAACCAACAACAACAAG, WBGene00040806   Expr1069236 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region