WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040854 Gene Name  CBG22250
Sequence Name  ? CBG22250 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domain: Transmembrane protein 26. Is an ortholog of C. elegans Y119C1B.3. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22250a.1 CBG22250a.1   [unknown]
Transcript:CBG22250b.1 CBG22250b.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22250a CBG22250a   [unknown]
CDS:CBG22250b CBG22250b   [unknown]

0 RNAi Result

15 Allele

Public Name
WBVar00033562
WBVar00033532
WBVar00033567
WBVar00033537
WBVar00033572
WBVar00033542
WBVar00033512
WBVar00033577
WBVar00033547
WBVar00033517
WBVar00033582
WBVar00033552
WBVar00033522
WBVar00033557
WBVar00033527

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG22250, GAAGCATTTCCGAAGAACGTGAGCAATTGTTCCCCCGCCATCATGGACGAAGAATGGATC, WBGene00040854   Expr1063578 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region