WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00038358 Gene Name  Cbr-odr-2
Sequence Name  ? CBG19083 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Caenorhabditis elegans ly-6-related protein and Caenorhabditis elegans ly-6-related. Is an ortholog of C. elegans odr-2. In C. elegans, odr-2 is involved in olfactory behavior and response to odorant. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG19083a.1 CBG19083a.1   [unknown]
Transcript:CBG19083c.1 CBG19083c.1   [unknown]
Transcript:CBG19083b.1 CBG19083b.1   [unknown]
 

Other

3 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG19083b CBG19083b   [unknown]
CDS:CBG19083a CBG19083a   [unknown]
CDS:CBG19083c CBG19083c   [unknown]

0 RNAi Result

8 Allele

Public Name
WBVar00138927
WBVar00138928
WBVar00138929
WBVar00138930
WBVar00138933
WBVar00138934
WBVar00138931
WBVar00138932

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated
  Transcripts that showed significantly decreased expression in day 6 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day6_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-odr-2, GTGTGCATGCCATAATAATCTCTGTAATTTTTCCGTGTCGCCGCCTTGTCTTTTCATTTT, WBGene00038358   Expr1063753 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region