WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00039207 Gene Name  Cbr-rnf-5
Sequence Name  ? CBG20152 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Zinc finger, RING-type; Zinc finger, RING/FYVE/PHD-type; and Zinc finger, C3HC4 type (RING finger). Is an ortholog of C. elegans rnf-5. In C. elegans, rnf-5 is involved in several processes, including inductive cell migration; striated muscle cell development; and ubiquitin-dependent protein catabolic process. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG20152b.1 CBG20152b.1   [unknown]
Transcript:CBG20152a.1 CBG20152a.1   [unknown]
 

Other

2 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG20152b CBG20152b   [unknown]
CDS:CBG20152a CBG20152a   [unknown]

0 RNAi Result

12 Allele

Public Name
WBVar00139141
WBVar00139142
WBVar00139140
WBVar00139145
WBVar00139143
WBVar00139144
WBVar00139134
WBVar00139135
WBVar00139138
WBVar00139139
WBVar00139136
WBVar00139137

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

0 Expression Clusters

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-rnf-5, GGAAACAGCGGCACCGGGATCCAGAATGGCTCAAGAGGAGGAATATTTGTCGAATATTTT, WBGene00039207   Expr1058101 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region