WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00040828 Gene Name  CBG22220
Sequence Name  ? CBG22220 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: Protein-tyrosine phosphatase, catalytic; Myotubularin family; PH-like domain superfamily; Protein-tyrosine phosphatase-like; Myotubularin-like phosphatase domain; and GRAM domain. Is an ortholog of C. elegans mtm-1. In C. elegans, mtm-1 is involved in negative regulation of engulfment of apoptotic cell and phospholipid dephosphorylation. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG22220.1 CBG22220.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG22220 CBG22220   [unknown]

0 RNAi Result

11 Allele

Public Name
WBVar00139857
WBVar00139858
WBVar00139855
WBVar00139856
WBVar00131248
WBVar00131249
WBVar00131247
WBVar00131252
WBVar00131253
WBVar00131250
WBVar00131251

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in day 9 adults of C.briggsae AF16 comparing to in day 6 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day6_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region