WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029086 Gene Name  CBG06893
Sequence Name  ? CBG06893 Organism  Caenorhabditis briggsae
Automated Description  Is affected by Cbr-spr-4 based on RNA-seq studies. Is predicted to encode a protein with the following domains: Protein Abitram and Single hybrid motif. Is an ortholog of C. elegans F54F2.7. Biotype  SO:0001217
Genetic Position  :±
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

6 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG06893.1 CBG06893.1   [unknown]
Transcript:CBG06893.4 CBG06893.4   [unknown]
Transcript:CBG06893.5 CBG06893.5   [unknown]
Transcript:CBG06893.2 CBG06893.2   [unknown]
Transcript:CBG06893.3 CBG06893.3   [unknown]
Transcript:CBG06893.6 CBG06893.6   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG06893 CBG06893   [unknown]

0 RNAi Result

38 Allele

Public Name
WBVar00136558
WBVar00136557
WBVar00136559
WBVar00136561
WBVar00136560
WBVar00136563
WBVar00136562
WBVar00035049
WBVar00035054
WBVar00035059
WBVar00035034
WBVar00035039
WBVar00035044
WBVar00007104
WBVar00007109
WBVar00007094
WBVar00007099
WBVar00111863
WBVar00111866
WBVar00111867
WBVar00111864
WBVar00111865
WBVar00111868
WBVar00111869
WBVar00111870
WBVar00111882
WBVar00111883
WBVar00111873
WBVar00111874
WBVar00111871

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in Cbr-spr-4(gu163) comparing to in AF16. DESeq2, FDR < 0.05. WBPaper00059178:Cbr-spr-4(gu163)_downregulated

2 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
Cbr-ztf-1, TACTCAATCAGCAGGAGGAGGTGGATATCGTTTTCGAAGAATTGGATAAATTGGATTTTG, WBGene00029089   Expr1062049 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  
CBG06893, GAGACACCGATGGAATGGGCGACTCGTTGCCGAAGAAGCGCCTCGTTTTGAAGTCGAATT, WBGene00029086   Expr1050928 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region