WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00029836 Gene Name  Cbr-clec-108
Sequence Name  ? CBG07950 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: C-type lectin-like/link domain superfamily; C-type lectin-like; C-type lectin fold; and Lectin C-type domain. Is an ortholog of C. elegans clec-100 and clec-108. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG07950.1 CBG07950.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG07950 CBG07950   [unknown]

0 RNAi Result

21 Allele

Public Name
WBVar00136779
WBVar00136781
WBVar00136780
WBVar00136783
WBVar00136782
WBVar00136785
WBVar00136784
WBVar00112897
WBVar00112896
WBVar00112895
WBVar00112894
WBVar00112893
WBVar00112892
WBVar00112891
WBVar00112890
WBVar00027674
WBVar00027679
WBVar00027684
WBVar00027689
WBVar00027694
WBVar00027699

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in day 9 adults of C.briggsae AF16 comparing to in day 1 adults of AF16. DESeq2, p < 0.01, fold change > 2. WBPaper00068053:CBG_Day9_vs_Day1_downregulated

1 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
CBG07950, GACATACTGTAGGCACTGAAGGACTCCGTTTTGGATCTGGACAACCGGATAATGAGAATA, WBGene00029836   Expr1065928 Developmental gene expression time-course. Raw data can be downloaded from ftp://caltech.wormbase.org/pub/wormbase/datasets-published/levin2012  

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region