WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00032300 Gene Name  Cbr-prx-5
Sequence Name  ? CBG11123 Organism  Caenorhabditis briggsae
Automated Description  Is predicted to encode a protein with the following domains: TPR repeat; PEX5/PEX5L; Tetratricopeptide repeat; and Tetratricopeptide-like helical domain superfamily. Is an ortholog of C. elegans prx-5. In C. elegans, prx-5 is involved in nematode larval development and protein import into peroxisome matrix. Biotype  SO:0001217
Genetic Position  :±
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1 Organism

Name Taxon Id
Caenorhabditis briggsae 6238

0 Synonyms

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:CBG11123.1 CBG11123.1   [unknown]
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:CBG11123 CBG11123   [unknown]

0 RNAi Result

4 Allele

Public Name
WBVar00137366
WBVar00137368
WBVar00137367
WBVar00137369

0 Chromosome

0 Chromosome Location

1 Data Sets

Name URL
WormBaseAcedbConverter  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Heat shock: 34C 30min. Transcripts that showed significantly increased expression in L2 larva stage C. briggsae animals after incubated in a 34C water bath for 30min. DESeq2 v 1.18.1, fold change > 2, FDR < 0.01. WBPaper00058955:heatshock_upregulated_CBG

0 Expression Patterns

0 GO Annotation

0 Homologues

0 Locations

0 Ontology Annotations

0 Regulates Expr Cluster

0 Sequence

1 Sequence Ontology Term

Identifier Name Description
gene  

0 Strains

0 Upstream Intergenic Region