WormMine

WSWS298

An integrated data resource for C. elegans and related nematodes

RNAi :

WormBase ID  WBRNAi00094608 Genotype  sur-5::UbV-GFP (strain PP563)
Phenotype Remark  There was no change in sur-5::UbV-GFP reporter expression in RNAi worms after treatment with IR. In wildtype worms the expression is reduced, therefore RNAi resulted in failure to degrade UbV-GFP (protein turnover). sur-5::UbV-GFP reporter expression was assessed 24 h post treatment with 90 Gy IR. Remark  The sur-5::UbV-GFP reporter strain expresses ubiquitin with an C-terminal glycine to valine mutation fused to GFP under the control of the sur-5 promoter. It is used to assess protein turnover.
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Data Sets

Name URL
WormBaseAcedbConverter  

2 Inhibits Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004464 rpn-8 R12E2.3 Caenorhabditis elegans
WBGene00044929 R12E2.17 R12E2.17 Caenorhabditis elegans

1 Inhibits Predicted Gene

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R12E2.3 R12E2.3 1089   I: 4175323-4175442

1 Laboratories

Primary Identifier
BJS

1 Phenotype

Identifier Name Description
WBPhenotype:0002010 protein turnover variant The dynamics of the replacement of old proteins by newly synthesized or modified proteins varies from that of control animals. This phenotype is often measured by fluorescence recovery after photobleaching (FRAP).

0 Phenotype _ Not _ Observed

1 Reference

First Author Title Year Journal Volume Pages PubMed ID
            WBPaper00044098

0 Strain